Difference between revisions of "Config:Plan"
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+ | '''Generated for SUMO toolbox version 6'''. | ||
+ | ''We are well aware that the list below is incomplete and possibly even out of date in some cases. We try to document everything as best we can but much is limited by available time and manpower. The most up to date documentation can always be found (if not here) in the default.xml configuration file and, of course, in the source files.'' | ||
== Plan == | == Plan == | ||
=== LevelPlot === | === LevelPlot === | ||
− | Only change if you | + | Only change if you need to generate level plots |
<source xmlns:saxon="http://icl.com/saxon" lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
− | <!--Only change if you | + | <!--Only change if you need to generate level plots--> |
<[[Config:LevelPlot|LevelPlot]]>default</[[Config:LevelPlot|LevelPlot]]></source> | <[[Config:LevelPlot|LevelPlot]]>default</[[Config:LevelPlot|LevelPlot]]></source> | ||
=== ContextConfig === | === ContextConfig === | ||
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<[[Config:SUMO|SUMO]]>default</[[Config:SUMO|SUMO]]></source> | <[[Config:SUMO|SUMO]]>default</[[Config:SUMO|SUMO]]></source> | ||
=== AdaptiveModelBuilder === | === AdaptiveModelBuilder === | ||
− | The AdaptiveModelBuilder specifies the model type and the modeling algorithm to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below | + | The AdaptiveModelBuilder specifies the model type and the hyperparameter optimization algorithm (= the algorithm to choose the model parameters, also referred to as the modeling algorithm) to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below. |
<source xmlns:saxon="http://icl.com/saxon" lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
− | <!--The AdaptiveModelBuilder specifies the model type and the modeling algorithm to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below--> | + | <!--The AdaptiveModelBuilder specifies the model type and the hyperparameter optimization algorithm (= the algorithm to choose the model parameters, also referred to as the modeling algorithm) to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below.--> |
<[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>rational</[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]></source> | <[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>rational</[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]></source> | ||
+ | === InitialDesign === | ||
+ | The AdaptiveModelBuilder specifies the model type and the hyperparameter optimization algorithm (= the algorithm to choose the model parameters, also referred to as the modeling algorithm) to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below. | ||
+ | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
+ | |||
+ | <!--The AdaptiveModelBuilder specifies the model type and the hyperparameter optimization algorithm (= the algorithm to choose the model parameters, also referred to as the modeling algorithm) to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below.--> | ||
+ | <[[Config:InitialDesign|InitialDesign]]>lhdWithCornerPoints</[[Config:InitialDesign|InitialDesign]]></source> | ||
=== SampleSelector === | === SampleSelector === | ||
The method to use for selecting new samples. Again 'gradient' is an id that refers to a SampleSelector tag defined below | The method to use for selecting new samples. Again 'gradient' is an id that refers to a SampleSelector tag defined below | ||
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<[[Config:SampleSelector|SampleSelector]]>gradient</[[Config:SampleSelector|SampleSelector]]></source> | <[[Config:SampleSelector|SampleSelector]]>gradient</[[Config:SampleSelector|SampleSelector]]></source> | ||
=== Run === | === Run === | ||
− | Runs can given a custom name by | + | Runs can given a custom name by using the name attribute, a repeat attribute is also possible to repeat a run multiple times |
<source xmlns:saxon="http://icl.com/saxon" lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
− | <!--Runs can given a custom name by | + | <!--Runs can given a custom name by using the name attribute, a repeat attribute is also possible to repeat a run multiple times--> |
<[[Config:Run|Run]] name="" repeat="1"> | <[[Config:Run|Run]] name="" repeat="1"> | ||
− | <!-- Configuration components, refer to | + | <!-- Configuration components, refer to id's defined below |
+ | (with the exception of the Simulator tag) | ||
Enties listed here override those defined on plan level --> | Enties listed here override those defined on plan level --> | ||
− | <!-- This is the problem we are going to model, refers to | + | <!-- This is the problem we are going to model, it refers to the name of a project |
− | <[[Config:Simulator|Simulator]]>Academic2DTwice | + | directory in the examples/ folder. It is also possible to specify an absolute |
+ | path or to specify a particular xml file within a project directory --> | ||
+ | <[[Config:Simulator|Simulator]]>Academic2DTwice</[[Config:Simulator|Simulator]]> | ||
<!-- | <!-- | ||
− | How is the simulator implemented: | + | How is the simulator implemented (ie, where your data comes from): |
- Matlab script (matlab) | - Matlab script (matlab) | ||
− | - scattered dataset ( | + | - scattered dataset (scatteredDataset), |
- local executable (local) | - local executable (local) | ||
- etc | - etc | ||
+ | |||
+ | Make sure this entry matches what is declared in the simulator xml file | ||
+ | in the project directory. It makes no sense to put matlab here if you only | ||
+ | have a scattered dataset to work with. | ||
--> | --> | ||
<[[Config:SampleEvaluator|SampleEvaluator]]>matlab</[[Config:SampleEvaluator|SampleEvaluator]]> | <[[Config:SampleEvaluator|SampleEvaluator]]>matlab</[[Config:SampleEvaluator|SampleEvaluator]]> | ||
<!-- | <!-- | ||
− | The default behavior is to model all outputs and score models using | + | The default behavior is to model all outputs with separate models and score models using |
− | crossvalidation. See below how to override this. Note that | + | crossvalidation. See below how to override this. Note that crossvalidation is a very |
− | + | expensive measure and can significantly slow things down when using computationally | |
− | + | expensive model types (e.g., neural networks) | |
− | |||
--> | --> | ||
+ | |||
+ | <!-- Model selection measure to use for this run (how models are scored) | ||
+ | If you put a measure to off its value is printed but not used for modeling. | ||
+ | If multiple measures are on, the weighted average value is optimized | ||
+ | (unless a pareto enabled modelbuilder is used (available from 6.1) --> | ||
+ | <[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".01" use="on"> | ||
+ | <Option key="folds" value="5"/> | ||
+ | </[[Config:Measure|Measure]]> | ||
− | <!-- Define inputs that are to be | + | <!-- Define inputs that are to be modelled this run (optional). This setting |
reduces the dimension of the problem by keeping inputs that were not | reduces the dimension of the problem by keeping inputs that were not | ||
− | selected at 0. | + | selected at 0. If an <[[Config:Inputs|Inputs]]> tag is not specified, the default behavior is to |
− | In this example, | + | model all inputs. |
− | + | In this example, both inputs x and y are selected | |
− | + | --> | |
<[[Config:Inputs|Inputs]]> | <[[Config:Inputs|Inputs]]> | ||
− | <[[Config:Input|Input]] name="y" /> | + | <[[Config:Input|Input]] name="x"/> |
− | <[[Config:Input|Input]] name=" | + | <[[Config:Input|Input]] name="y"/> |
+ | <!-- Setting a simulator input to a constant --> | ||
+ | <!-- <[[Config:Input|Input]] name="y value="14.6"/> --> | ||
</[[Config:Inputs|Inputs]]> | </[[Config:Inputs|Inputs]]> | ||
− | |||
+ | <!-- | ||
+ | An example configuration for the Academic2DTwice example used here. | ||
+ | Each output can be configured to use separate Modelbuilders, measures and sample selectors | ||
− | + | Again it is not necessary to specify an Outputs tag. If you dont, all outputs are modeled | |
− | <!-- Complex example of a modeling run of the InductivePosts example with many different | + | in parallel. |
+ | --> | ||
+ | <[[Config:Outputs|Outputs]]> | ||
+ | <[[Config:Output|Output]] name="out"> | ||
+ | <!-- | ||
+ | You can specify output specific configuration here | ||
+ | |||
+ | <[[Config:SampleSelector|SampleSelector]]>gradient</[[Config:SampleSelector|SampleSelector]]> | ||
+ | <[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>rational</[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]> | ||
+ | <[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".0001" use="on" /> | ||
+ | --> | ||
+ | </[[Config:Output|Output]]> | ||
+ | |||
+ | <[[Config:Output|Output]] name="outinverse"> | ||
+ | <!-- | ||
+ | <[[Config:SampleSelector|SampleSelector]]>grid</[[Config:SampleSelector|SampleSelector]]> | ||
+ | <[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>krigingps</[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]> | ||
+ | <[[Config:Measure|Measure]] type="[[Measure#ValidationSet|ValidationSet]]" target=".05" use="on" /> | ||
+ | --> | ||
+ | </[[Config:Output|Output]]> | ||
+ | </[[Config:Outputs|Outputs]]> | ||
+ | |||
+ | <!-- | ||
+ | Complex example of a modeling run of the InductivePosts example with many different | ||
output configurations. | output configurations. | ||
− | + | --> | |
+ | <!-- | ||
<[[Config:Outputs|Outputs]]> | <[[Config:Outputs|Outputs]]> | ||
− | + | ||
− | Model the modulus of complex output S22 using cross-validation and the default model | + | Model the modulus of complex output S22 using cross-validation and the default model |
− | and sample selector. | + | builder and sample selector. |
<[[Config:Output|Output]] name="S22" complexHandling="modulus"> | <[[Config:Output|Output]] name="S22" complexHandling="modulus"> | ||
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− | Model the | + | Model the real part of complex output S22, but introduce some normally-distributed noise |
(variance .01 by default). | (variance .01 by default). | ||
− | <[[Config:Output|Output]] name="S22" complexHandling=" | + | <[[Config:Output|Output]] name="S22" complexHandling="real"> |
<[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".05" /> | <[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".05" /> | ||
<[[Config:Modifier|Modifier]] type="[[Modifier#Noise|Noise]]" /> | <[[Config:Modifier|Modifier]] type="[[Modifier#Noise|Noise]]" /> | ||
</[[Config:Output|Output]]> | </[[Config:Output|Output]]> | ||
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--> | --> | ||
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Measure examples: | Measure examples: | ||
− | * 5-fold crossvalidation (warning expensive on some model types | + | * 5-fold crossvalidation (warning expensive on some model types!) |
<[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".001" use="on"> | <[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".001" use="on"> | ||
− | + | <Option key="folds" value="5"/> | |
− | + | </[[Config:Measure|Measure]]> | |
* Using a validation set, the size taken as 20% of the available samples | * Using a validation set, the size taken as 20% of the available samples | ||
− | + | <[[Config:Measure|Measure]] type="[[Measure#ValidationSet|ValidationSet]]" target=".001"> | |
− | + | <Option key="percentUsed" value="20"/> | |
− | + | </[[Config:Measure|Measure]]> | |
− | |||
* Using a validation set defined in an external file (scattered data) | * Using a validation set defined in an external file (scattered data) | ||
− | + | <[[Config:Measure|Measure]] type="[[Measure#ValidationSet|ValidationSet]]" target=".001"> | |
− | + | * the validation set come from a file | |
− | + | <Option key="type" value="file"/> | |
− | + | * the test data is scattered data so we need a scattered sample evaluator | |
− | + | to load the data and evaluate the points. The filename is taken from the | |
− | + | <[[Config:ScatteredDataFile|ScatteredDataFile]]> tag in the simulator xml file. | |
− | + | Optionally you can specify an option with key "id" to specify a specifc | |
− | + | dataset if there is more than one choice. | |
− | + | <[[Config:SampleEvaluator|SampleEvaluator]] | |
+ | type="ibbt.sumo.SampleEvaluators.datasets.ScatteredDatasetSampleEvaluator"/> | ||
+ | </[[Config:Measure|Measure]]> | ||
* Used for testing optimization problems | * Used for testing optimization problems | ||
Line 156: | Line 175: | ||
Often one uses this just as a stopping criterion for benchmarking problems. | Often one uses this just as a stopping criterion for benchmarking problems. | ||
* trueValue: a known global minimum | * trueValue: a known global minimum | ||
− | <[[Config:Measure|Measure]] type="[[Measure#TestMinimum|TestMinimum]]" errorFcn="relativeError" trueValue="-5.0" target="0.1" use="on" /> | + | <[[Config:Measure|Measure]] type="[[Measure#TestMinimum|TestMinimum]]" errorFcn="relativeError" trueValue="-5.0" target="0.1" use="on" /> |
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--> | --> | ||
</[[Config:Run|Run]]></source> | </[[Config:Run|Run]]></source> |
Revision as of 14:22, 17 July 2008
Generated for SUMO toolbox version 6. We are well aware that the list below is incomplete and possibly even out of date in some cases. We try to document everything as best we can but much is limited by available time and manpower. The most up to date documentation can always be found (if not here) in the default.xml configuration file and, of course, in the source files.
Plan
LevelPlot
Only change if you need to generate level plots
<!--Only change if you need to generate level plots-->
<[[Config:LevelPlot|LevelPlot]]>default</[[Config:LevelPlot|LevelPlot]]>
ContextConfig
ContextConfig should (normally) always be set to 'default'
<!--ContextConfig should (normally) always be set to 'default'-->
<[[Config:ContextConfig|ContextConfig]]>default</[[Config:ContextConfig|ContextConfig]]>
SUMO
SUMO should (normally) always be set to 'default'
<!--SUMO should (normally) always be set to 'default'-->
<[[Config:SUMO|SUMO]]>default</[[Config:SUMO|SUMO]]>
AdaptiveModelBuilder
The AdaptiveModelBuilder specifies the model type and the hyperparameter optimization algorithm (= the algorithm to choose the model parameters, also referred to as the modeling algorithm) to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below.
<!--The AdaptiveModelBuilder specifies the model type and the hyperparameter optimization algorithm (= the algorithm to choose the model parameters, also referred to as the modeling algorithm) to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below.-->
<[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>rational</[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>
InitialDesign
The AdaptiveModelBuilder specifies the model type and the hyperparameter optimization algorithm (= the algorithm to choose the model parameters, also referred to as the modeling algorithm) to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below.
<!--The AdaptiveModelBuilder specifies the model type and the hyperparameter optimization algorithm (= the algorithm to choose the model parameters, also referred to as the modeling algorithm) to use The default value 'rational' refers to rational functions. 'rational' is an id that refers to an AdaptiveModelBuilder tag that is defined below.-->
<[[Config:InitialDesign|InitialDesign]]>lhdWithCornerPoints</[[Config:InitialDesign|InitialDesign]]>
SampleSelector
The method to use for selecting new samples. Again 'gradient' is an id that refers to a SampleSelector tag defined below
<!--The method to use for selecting new samples. Again 'gradient' is an id that refers to a SampleSelector tag defined below-->
<[[Config:SampleSelector|SampleSelector]]>gradient</[[Config:SampleSelector|SampleSelector]]>
Run
Runs can given a custom name by using the name attribute, a repeat attribute is also possible to repeat a run multiple times
<!--Runs can given a custom name by using the name attribute, a repeat attribute is also possible to repeat a run multiple times-->
<[[Config:Run|Run]] name="" repeat="1">
<!-- Configuration components, refer to id's defined below
(with the exception of the Simulator tag)
Enties listed here override those defined on plan level -->
<!-- This is the problem we are going to model, it refers to the name of a project
directory in the examples/ folder. It is also possible to specify an absolute
path or to specify a particular xml file within a project directory -->
<[[Config:Simulator|Simulator]]>Academic2DTwice</[[Config:Simulator|Simulator]]>
<!--
How is the simulator implemented (ie, where your data comes from):
- Matlab script (matlab)
- scattered dataset (scatteredDataset),
- local executable (local)
- etc
Make sure this entry matches what is declared in the simulator xml file
in the project directory. It makes no sense to put matlab here if you only
have a scattered dataset to work with.
-->
<[[Config:SampleEvaluator|SampleEvaluator]]>matlab</[[Config:SampleEvaluator|SampleEvaluator]]>
<!--
The default behavior is to model all outputs with separate models and score models using
crossvalidation. See below how to override this. Note that crossvalidation is a very
expensive measure and can significantly slow things down when using computationally
expensive model types (e.g., neural networks)
-->
<!-- Model selection measure to use for this run (how models are scored)
If you put a measure to off its value is printed but not used for modeling.
If multiple measures are on, the weighted average value is optimized
(unless a pareto enabled modelbuilder is used (available from 6.1) -->
<[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".01" use="on">
<Option key="folds" value="5"/>
</[[Config:Measure|Measure]]>
<!-- Define inputs that are to be modelled this run (optional). This setting
reduces the dimension of the problem by keeping inputs that were not
selected at 0. If an <[[Config:Inputs|Inputs]]> tag is not specified, the default behavior is to
model all inputs.
In this example, both inputs x and y are selected
-->
<[[Config:Inputs|Inputs]]>
<[[Config:Input|Input]] name="x"/>
<[[Config:Input|Input]] name="y"/>
<!-- Setting a simulator input to a constant -->
<!-- <[[Config:Input|Input]] name="y value="14.6"/> -->
</[[Config:Inputs|Inputs]]>
<!--
An example configuration for the Academic2DTwice example used here.
Each output can be configured to use separate Modelbuilders, measures and sample selectors
Again it is not necessary to specify an Outputs tag. If you dont, all outputs are modeled
in parallel.
-->
<[[Config:Outputs|Outputs]]>
<[[Config:Output|Output]] name="out">
<!--
You can specify output specific configuration here
<[[Config:SampleSelector|SampleSelector]]>gradient</[[Config:SampleSelector|SampleSelector]]>
<[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>rational</[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>
<[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".0001" use="on" />
-->
</[[Config:Output|Output]]>
<[[Config:Output|Output]] name="outinverse">
<!--
<[[Config:SampleSelector|SampleSelector]]>grid</[[Config:SampleSelector|SampleSelector]]>
<[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>krigingps</[[Config:AdaptiveModelBuilder|AdaptiveModelBuilder]]>
<[[Config:Measure|Measure]] type="[[Measure#ValidationSet|ValidationSet]]" target=".05" use="on" />
-->
</[[Config:Output|Output]]>
</[[Config:Outputs|Outputs]]>
<!--
Complex example of a modeling run of the InductivePosts example with many different
output configurations.
-->
<!--
<[[Config:Outputs|Outputs]]>
Model the modulus of complex output S22 using cross-validation and the default model
builder and sample selector.
<[[Config:Output|Output]] name="S22" complexHandling="modulus">
<[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".05" />
</[[Config:Output|Output]]>
Model the real part of complex output S22, but introduce some normally-distributed noise
(variance .01 by default).
<[[Config:Output|Output]] name="S22" complexHandling="real">
<[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".05" />
<[[Config:Modifier|Modifier]] type="[[Modifier#Noise|Noise]]" />
</[[Config:Output|Output]]>
-->
<!--
Measure examples:
* 5-fold crossvalidation (warning expensive on some model types!)
<[[Config:Measure|Measure]] type="[[Measure#CrossValidation|CrossValidation]]" target=".001" use="on">
<Option key="folds" value="5"/>
</[[Config:Measure|Measure]]>
* Using a validation set, the size taken as 20% of the available samples
<[[Config:Measure|Measure]] type="[[Measure#ValidationSet|ValidationSet]]" target=".001">
<Option key="percentUsed" value="20"/>
</[[Config:Measure|Measure]]>
* Using a validation set defined in an external file (scattered data)
<[[Config:Measure|Measure]] type="[[Measure#ValidationSet|ValidationSet]]" target=".001">
* the validation set come from a file
<Option key="type" value="file"/>
* the test data is scattered data so we need a scattered sample evaluator
to load the data and evaluate the points. The filename is taken from the
<[[Config:ScatteredDataFile|ScatteredDataFile]]> tag in the simulator xml file.
Optionally you can specify an option with key "id" to specify a specifc
dataset if there is more than one choice.
<[[Config:SampleEvaluator|SampleEvaluator]]
type="ibbt.sumo.SampleEvaluators.datasets.ScatteredDatasetSampleEvaluator"/>
</[[Config:Measure|Measure]]>
* Used for testing optimization problems
* Calculates the (relative) error between the current minimum and a known minimum.
Often one uses this just as a stopping criterion for benchmarking problems.
* trueValue: a known global minimum
<[[Config:Measure|Measure]] type="[[Measure#TestMinimum|TestMinimum]]" errorFcn="relativeError" trueValue="-5.0" target="0.1" use="on" />
-->
</[[Config:Run|Run]]>